Index A | B | C | D | E | F | G | H | I | K | L | M | N | O | P | Q | R | S | T | U | V | W A anndata_to_df() (in module ehrapy.anndata) annotate_text() (ehrapy.tools.mc static method) B breast_cancer_coimbra() (in module ehrapy.data) breast_tissue() (in module ehrapy.data) C causal_effect() (in module ehrapy.plot) causal_inference() (in module ehrapy.tools) cervical_cancer_risk_factors() (in module ehrapy.data) chronic_kidney_disease() (in module ehrapy.data) clip_quantile() (in module ehrapy.preprocessing) clustermap() (in module ehrapy.plot) combat() (in module ehrapy.preprocessing) create_concept_db() (ehrapy.tools.MedCAT static method) create_vocabulary() (ehrapy.tools.MedCAT static method) D delete_from_obs() (in module ehrapy.anndata) dendrogram() (in module ehrapy.plot) (in module ehrapy.tools) dermatology() (in module ehrapy.data) df_to_anndata() (in module ehrapy.anndata) diabetes_130() (in module ehrapy.data) diffmap() (in module ehrapy.plot) (in module ehrapy.tools) dotplot() (in module ehrapy.plot) dpt() (in module ehrapy.tools) dpt_groups_pseudotime() (in module ehrapy.plot) dpt_timeseries() (in module ehrapy.plot) draw_graph() (in module ehrapy.plot) (in module ehrapy.tools) E echocardiogram() (in module ehrapy.data) ehrapy module embedding() (in module ehrapy.plot) embedding_density() (in module ehrapy.plot) (in module ehrapy.tools) encode() (in module ehrapy.preprocessing) explicit_impute() (in module ehrapy.preprocessing) F filter_rank_features_groups() (in module ehrapy.tools) G get_annotation_overview() (ehrapy.tools.mc static method) get_obs_df() (in module ehrapy.anndata) get_rank_features_df() (in module ehrapy.anndata) get_var_df() (in module ehrapy.anndata) glm() (in module ehrapy.tools) H heart_disease() (in module ehrapy.data) heart_failure() (in module ehrapy.data) heatmap() (in module ehrapy.plot) hepatitis() (in module ehrapy.data) highly_variable_features() (in module ehrapy.preprocessing) I ingest() (in module ehrapy.tools) iterative_svd_impute() (in module ehrapy.preprocessing) K kmf() (in module ehrapy.plot) (in module ehrapy.tools) knn_impute() (in module ehrapy.preprocessing) L leiden() (in module ehrapy.tools) load_concept_db() (ehrapy.tools.MedCAT static method) load_vocabulary() (ehrapy.tools.MedCAT static method) log_norm() (in module ehrapy.preprocessing) louvain() (in module ehrapy.tools) M marker_feature_overlap() (in module ehrapy.tools) matrix_factorization_impute() (in module ehrapy.preprocessing) matrixplot() (in module ehrapy.plot) maxabs_norm() (in module ehrapy.preprocessing) MedCAT (class in ehrapy.tools) mice_forest_impute() (in module ehrapy.preprocessing) mimic_2() (in module ehrapy.data) mimic_2_preprocessed() (in module ehrapy.data) mimic_3_demo() (in module ehrapy.data) minmax_norm() (in module ehrapy.preprocessing) miss_forest_impute() (in module ehrapy.preprocessing) missing_values_barplot() (in module ehrapy.plot) missing_values_dendrogram() (in module ehrapy.plot) missing_values_heatmap() (in module ehrapy.plot) missing_values_matrix() (in module ehrapy.plot) module ehrapy move_to_obs() (in module ehrapy.anndata) move_to_x() (in module ehrapy.anndata) N neighbors() (in module ehrapy.preprocessing) nuclear_norm_minimization_impute() (in module ehrapy.preprocessing) O offset_negative_values() (in module ehrapy.preprocessing) ols() (in module ehrapy.plot) (in module ehrapy.tools) P paga() (in module ehrapy.plot) (in module ehrapy.tools) paga_compare() (in module ehrapy.plot) paga_path() (in module ehrapy.plot) parkinson_dataset_with_replicated_acoustic_features() (in module ehrapy.data) parkinsons() (in module ehrapy.data) parkinsons_disease_classification() (in module ehrapy.data) parkinsons_telemonitoring() (in module ehrapy.data) pca() (in module ehrapy.plot) (in module ehrapy.preprocessing) (in module ehrapy.tools) pca_loadings() (in module ehrapy.plot) pca_overview() (in module ehrapy.plot) pca_variance_ratio() (in module ehrapy.plot) power_norm() (in module ehrapy.preprocessing) Q qc_lab_measurements() (in module ehrapy.preprocessing) qc_metrics() (in module ehrapy.plot) (in module ehrapy.preprocessing) quantile_norm() (in module ehrapy.preprocessing) R rank_features_groups() (in module ehrapy.plot) (in module ehrapy.tools) rank_features_groups_dotplot() (in module ehrapy.plot) rank_features_groups_heatmap() (in module ehrapy.plot) rank_features_groups_matrixplot() (in module ehrapy.plot) rank_features_groups_stacked_violin() (in module ehrapy.plot) rank_features_groups_tracksplot() (in module ehrapy.plot) rank_features_groups_violin() (in module ehrapy.plot) ranking() (in module ehrapy.plot) read_csv() (in module ehrapy.io) read_fhir() (in module ehrapy.io) read_h5ad() (in module ehrapy.io) regress_out() (in module ehrapy.preprocessing) robust_scale_norm() (in module ehrapy.preprocessing) run_unsupervised_training() (ehrapy.tools.mc static method) S save_concept_db() (ehrapy.tools.MedCAT static method) save_model_pack() (ehrapy.tools.MedCAT method) save_vocabulary() (ehrapy.tools.MedCAT static method) scale_norm() (in module ehrapy.preprocessing) scatter() (in module ehrapy.plot) set_filter_by_tui() (ehrapy.tools.MedCAT method) simple_impute() (in module ehrapy.preprocessing) soft_impute() (in module ehrapy.preprocessing) spatial() (in module ehrapy.plot) sqrt_norm() (in module ehrapy.preprocessing) stacked_violin() (in module ehrapy.plot) statlog_heart() (in module ehrapy.data) subsample() (in module ehrapy.preprocessing) T test_kmf_logrank() (in module ehrapy.tools) test_nested_f_statistic() (in module ehrapy.tools) thyroid() (in module ehrapy.data) tracksplot() (in module ehrapy.plot) translate_obs_column() (ehrapy.tools.Translator method) translate_text() (ehrapy.tools.Translator method) translate_var_column() (ehrapy.tools.Translator method) translate_X_column() (ehrapy.tools.Translator method) Translator (class in ehrapy.tools) tsne() (in module ehrapy.plot) (in module ehrapy.tools) type_overview() (in module ehrapy.anndata) U umap() (in module ehrapy.plot) (in module ehrapy.tools) undo_encoding() (in module ehrapy.preprocessing) update_cat() (ehrapy.tools.MedCAT method) update_cat_config() (ehrapy.tools.MedCAT method) V violin() (in module ehrapy.plot) W winsorize() (in module ehrapy.preprocessing) write() (in module ehrapy.io)